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tpjohns93/README.md

Scientist specializing in scalable workflow design and research operations, with experience spanning sample collection through data analysis across clinical and food sciences. I build computational tools that enable robust bench-to-data analysis workflows.

🔬 Current Focus

  • Clinical neurogenetics
  • Marine microbial ecology

🔍 Professional Interests

  • Future-proofing and problem solving
  • Bench science workflow and protocol design
  • Biomarker discovery and validation
  • Data visualization and reporting

📫 Contact

LinkedIn · tpjohns93@gmail.com

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  1. YOKOYAMA-UCSF/cvd-biomarkers-ad YOKOYAMA-UCSF/cvd-biomarkers-ad Public

    This repository contains scripts for a data sharing effort to replicate results published in Johnson et al. 2025

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  2. probe_based_genotyping probe_based_genotyping Public

    This repository contains scripts for deriving genotype given SNP-specific allele concentrations as output from a probe-based quantitative assay platform (ex. BioRad QX200 ddPCR).

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  3. pbmc_score pbmc_score Public

    This repository contains script for assessing consistency of sample processing for cell isolation between users and provides metrics establishing baselines for future-users.

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