Feat/add pypi

[k-burt-uch]

Link to JIRA ticket if there is one:

New Features

• Add pypi

Breaking Changes

Bug Fixes

Improvements

Dependency updates

Deployment changes

[github-actions]

The style in this PR agrees with black. ✔️

This formatting comment was generated automatically by a script in uc-cdis/wool.

[nss10]

@k-burt-uch
I know this isn’t strictly part of your task, but could you take a quick look at why the unit tests are failing? It looks like the failure is happening during poetry install, so I’m wondering if it’s a small fix.
If it turns out to be more than that, let me know — I can pick it up as an on-call task.

[github-actions]

filepath	passed	error	skipped	SUBTOTAL
tests/test_graph_submit_and_query.py	0	14	0	14
tests/test_data_upload.py	8	0	1	9
TOTAL	8	14	1	23

Please find the detailed integration test report here

Please find the Github Action logs here

[k-burt-uch]

@k-burt-uch I know this isn’t strictly part of your task, but could you take a quick look at why the unit tests are failing? It looks like the failure is happening during poetry install, so I’m wondering if it’s a small fix. If it turns out to be more than that, let me know — I can pick it up as an on-call task.

Looks like poetry 2.3.0 is causing some havoc with Python 3.9

Working on it.

[github-actions]

filepath	passed	error	skipped	SUBTOTAL
tests/test_graph_submit_and_query.py	13	2	1	16
tests/test_data_upload.py	8	0	1	9
TOTAL	21	2	2	25

Please find the detailed integration test report here

Please find the Github Action logs here

[github-actions]

filepath	passed	skipped	SUBTOTAL
tests/test_graph_submit_and_query.py	13	1	14
TOTAL	13	1	14

Please find the detailed integration test report here

Please find the Github Action logs here

[Avantol13]

If we're pushing to PyPI, I would prefer to prefix this with gen3-. Does that break a ton of things?

[Avantol13]

I would also propose that perhaps instead of including as a separate package entirely, we include this as an optional install of the Gen3 Python SDK/CLI pip install gen3[data-simulator] and expose the CLI similar to how we do pypfb. This could be a secondary/in-addition-to having it alone on pypi though

[k-burt-uch]

Created https://ctds-planx.atlassian.net/browse/PD-119 to add to the gen3sdk. Fixing issues caused by the rename