Vivarium Collective
home of the vivarium simulation ecosystem
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Showing 10 of 133 repositories
- pbg-artistoo Public
Process-bigraph wrapper for the Artistoo Cellular Potts Model (real simulator via a Node.js bridge)
- pbg-cpm Public
Native process-bigraph Cellular Potts Model (CPM) framework — fast 2D/3D Rust core, remaking CompuCell3D
- pbg-autopoiesis Public
A whole-cell model built as a precarious, self-bounding network via composition — autopoiesis through the biological schema framework.
- pbg-chaste Public
Process-bigraph wrapper for the Chaste cell-based simulator, run via the chaste/pychaste Docker image.
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