Hi,
Thank you for making this tool. I've corrected the contig orientation and generated plots using FicChr; however my contigs are out of order.
This is a species1areference vs species1bquery
All chromosomes are arranged from ch1-ch24 in the original .fasta files, both before and after orientation fixing. Is there a way to correct this?
In the instructions it mentions an .agp file-- I do not have this for my assemblies (is there a tool out there which generates this?), or is there an easier way to correct this?
Hi,
Thank you for making this tool. I've corrected the contig orientation and generated plots using FicChr; however my contigs are out of order.
This is a species1areference vs species1bquery
All chromosomes are arranged from ch1-ch24 in the original .fasta files, both before and after orientation fixing. Is there a way to correct this?
In the instructions it mentions an .agp file-- I do not have this for my assemblies (is there a tool out there which generates this?), or is there an easier way to correct this?